RNA sequences with modifications

Showing 12 sequences.

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TypeSubtypeGenBankOrganismOrganellum
-----123456789012345678901234567890123456789012345678901234567890--1234567890123456789012---------------------3456789012345678901234567890-12345-67890123-45678901234567-----8901----2345678901234567890-------123--45-----67890-1234-56789-0123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890------------------------------------------------------------------------------------------------------------------------------------------------------------123456-7-----------------------------890123----45--6789012345678901-23456-7890-123456----7890123456789012345678901234567890123456789-----0123456--------789----------------012345678901234567890123456789012345678901-23456-78-90123456789012345678901234567890123456-789012345678901234567890123456789012345678901234567890123456789012345678-9012345678901234----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------56-78---------------------------901234567890123456789012345678901234567890123456789012345678901-------23456----789--01234567890123456-----------------------------------------------------------------------------------------------------------------------------------------------------------------------7890123456789012-----------------------345678901234567890123456789012345678901234567890123456789012345678901234567890123-45-678901-2-34567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456-7890-------------------------------123456789012345-6789012345678----901234567890-123456789-0123456789012345678901234-56-----------------------------------78901--2345678901234567890123456789012345-678901-234567890123456789012345678901234567890123-456789012-34------------56789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890-1--234567890123456789012345678-9012-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3456-----7890123--45678901234567-890123456-789012345678-9-0-12345678901234567-8901234567890123456789012345678-901--2345678901234567890123456789012-345678901234567-8901234567890123456789012345678-901234567890123-4567------------------------------------------------------------------------890-123456789-01234567890123456789012345678-9-0123-45------------------------------------------------------------67890123456789012---3456789-01234--56789012--3--456-7890123456-789012345-67890----1---2345-67890123456789012-3456789--012345--6789012345678-90123--4567--89012--34567890123456789--0-1234-5-6789012345678----9012--3456----78-9-01234567890123456789012345678901234567890--12345-678901234567-890123-45678-901234567890123456789012345678901234567890123456789012345678901--------23456789012-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------34567---------890123-456789012345678901234567890123456789012345678901234567890123456-7890-12345678901234567890123456789012345-67890123456789012345678-----9-012-----34567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123-45678901234567890123456789012345678901234567890123------------------------------------------------------4567890123456789012345678901234567890123456-78901234567890123456789--0123456789012----------------------------------------------------------------------------------34567890123456789012345678901234567-89012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345---67-890123456789012345678901234567890123456789-0--12345---67890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234-5678901234567890123456789012345678901234567890123456789012345678901-234567890123456-789012345678901234567890123456789012345678901234567890123-45678-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------90123456-------------789---------------01234567890123456789012345678901234567-89-01234567890123456--------7890----------1234567890123---4567--890-123456789012345678901234---
rRNALSUJ01695Escherichia coliprokaryotic cytosol -----GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUG--CUAAUCUGCGAUAAGCGUCGGU---------------------AAGGUGAUAUGAACCGUUAUAACCGGCG-AUUUC-CGAAUGGG-GAAACCCAGUGUGU-----UUCG----ACACACUAUCAUUAACUGA-------AUC--CA-----UAGGU-UAAU-GAGGC-GAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCA------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCU-G-----------------------------AAUCAG----UG--UGUGUGUUAGUGGAAG-CGUCU-GGAA-AGGCGC----GCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUG-----UGAGCUC--------GAU----------------GAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGG-ACCAU-CC-UCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACC-AGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACA-AGCAGUGGGAGCACGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UU-AG---------------------------GCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC-------GAAUA----GGG--GAGCCGAAGGGAAACCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGUCUUAACUGGGCGU-----------------------UAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCG-AA-CCGACU-A-AUKPTGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAU-UCAU-------------------------------CUCCGGGGGUAGAGC-ACUGUUUCGGCAA----GGGGGUCAUCCC-GACUUACCA-ACCCGAUGCAAACUGCGAAUACCGG-AG-----------------------------------AAUGU--UAUCACGGGAGACACACGGCGGGPGCUAACGUCC-GUCGUG-AAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUC-AUGGUUAAG-UG------------GGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGC-U--AAACCAUGCACCGAAGCUGCGGCAGCG-ACGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAU-----GCGUUGU--UGGGUAGGGGAGCG-UUCUGUAAG-CCUGCGAAGGUG-U-G-CUGUGAGGCAUGCUGGA-GGUAUCAGAAGUGCGAAUGCUGACAUAAGUA-ACG--AUAAAGCGGGUGAAAAGCCCGCUCGCCGGAA-GACCAAGGGUUCCUG-UCCAACGUUAAUCGGGGCAGGGUGAGUCGAC-CCCUAAGGCGAGGCC-GAAA------------------------------------------------------------------------GGC-GUAGUCGAU-GGGAAACAGGUUAAUAUUCCUGUACUUGG-U-GUUA-CU------------------------------------------------------------GCGAAGGGGGGACGGAG---AAGGCUA-UGUUG--GCCGGGCG--A--CGG-UUGUCCCGGU-UUAAGCGUG-UAGGC----U---GGUU-UUCCAGGCAAAUCCGGA-AAAUCAA--GGCUGA--GGCGUGAUGACGA-GGCAC--UACG--GUGCU--GAAGCAACAAAUGCCCU--G-CUUC-C-AGGAAAAGCCUCU----AAGC--AUCA----GG-U-AACAUCAAAUCGUACCCCAAACCGACAC=GGUGGUCAGGUA--GAGAA-UACCAAGGCGCU-UGAGAG-AACUC-GGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUG--------AGGUCCCUCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAUG---------GAGCUG-AAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACAC-GAAA-GUGGACGUAUACGGUGUGACGCCULCCCGGUGCCG-GAAGGUUAAUUGAUGGGGUUAGC-----G-CAA-----GCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGPAACκAPAACGGUCCUAAGGUAGCGAAATUCCUUGUCGGGUAAGUUCCGAC?UGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUG=AGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGU7AACCUUUACUAUAGCUUGACACUG-AACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGAC------------------------------------------------------GCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG-UUUGAUGUUCUAACGUUGACCCG--UAAUCCGGGUUGC----------------------------------------------------------------------------------GGACAGUGUCUGGUGGGUAGUUUGACUG#GGCGGU-CUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCG---UG-ACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUG-G--UUCUG---AAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGLGGADAACAGGCPGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCABCUÇG/PGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCJGUUCGCCAUUUAAAGUGGUACGCGAGCPGGGUUUAGAACGUCGUGAGACAGUPCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGG-GCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCA-CUGCCCGGUAGCUAA-AUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGU-UCUCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUGACCCU-------------UUA---------------AGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUA-GG-CCGGGUGUGUAAGCGCA--------GCGA----------UGCGUUGAGCUAA---CCGG--UAC-UAAUGAACCGUGAGGCUUAACCUU---
rRNALSUAL009126Bacillus subtilisprokaryotic cytosol -----GGUUAAGUUAGAAAGGGCGCGCGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGG--ACGAACACCGAUAUGCUUCGGG---------------------GAGCUGUAAGCAAGCUUUG-AUCCGGAG-AUUUC-CGAAUGGG-GAAACCCACCACUC---guaaug----GAGUGGUAUCCAUAUCUGA-------AUU--CA-----UAGGA-UAUGaGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUUAGCCCAAAccaagagg-----------cuug----------ccucuugggguuguagga-------------------------------------------------------------------------------------------------------cacucu-g-------------------uac-ggaguu-acaaa----gg--aacgagguaGAUGAAGAGGUCU-GGAA-AGGCCC----GCCAUAGGAGGUAACAGCCCUGUAGUCaaaacuucguucu---cuccu--gaguggauccu---------------------GAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGG-ACCAU-CU-CCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACC-AGUACCGUGAGGGAAAGGUGAAAAGCACCCCGG-AAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACA-AGUAGUCAGAGCCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uu-aa----------------------------cgggUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCCCGUGCAAGGUUAAgca------gaaga-u--gcG--GAGCCGCAGCGAAAGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGUCUGAAUAGGGCGc----------------------augaGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCG-AA-CCCACG-C-ACGUTGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGu-aagag-------------------------------UCUUGGAGGUAGAGC-ACUGAUUGGACUA----GGGGCCCcuacc-GGGUUACCG-AAUUCAGUCAAACUCCGAAUGCCAAUGa------------------------------------cuua---uCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCC-GUAGUC-GAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUA-UACGUUAAG-UG------------GAAAAGGAUGUGGAGUUGCUUAGACAACCAGGAUGUUGGCUUAGAAGCAGCCACCAUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGC-U--AAACGUAUCACCGAAGCUGCGGacugu-uc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uuc--------gaaca--guGGUAGGAGAGCG-UUCUAAG-G-GCUGUGAAGCCA-G-A-CCGGAAGGACUGGUGGA-GCGCUUAGAAGUGAGAAUGCCGGUAUGAGUA-GCG--A-AAGAGGGGUGAGAAUCCCCUCCACCGAAU-GCCUAAGGUUUCCUG-AGGAAGGCUCGUCCGCUCAGGGUUAGUCGGG-ACCUAAGCCGAGGCC-GAAA------------------------------------------------------------------------GGC-GUAGGCGAU-GGACAACAGGUUGAUAUUCCUGUACcacc-uccuca-cc---------------------------------------auu---------------ugagcaauggggggacgcag---gaggaua-ggguaa-gcgcgguau----uggauau-ccgcgu-ccaagcagu-uaggc--------uggg-aaauaggcaaauccguu-ucccauaa-ggcuga--gcugugauggcga--gcgaa-auauaguagc---gaaguuccugauuccac--a-cugc-c-aagaaaagccucu----a-gc--ga------gg-u-gagaggugcCCGUACCGCAAACCGACACAGGUAGGCGAGGA--GAGAA-UCCUAAGGUGAU-CGAGAG-AACUC-UCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUG----------------uuagggugcaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcccga-----------------GAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCC-GUAA-GGCGAAGUAUAGGGGCUGACGCCUGCCCGGUGCUG-GAAGGUUAAGAGGAGCGCUUAGC-----G-UAA-----GCGAAGGUGCGAAUUGAAGCCCCAGUAAACGGCGGCCGPAACPAPAACGGUCCUAAGGUAGCGAAATUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGCAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGG=AAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAU-GUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGC------------------------------------------------------GCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGU-AUUGACCUUCUAACCCGCCGCCC--UUAUCGGGCGGGG----------------------------------------------------------------------------------AGACAGUGUCAGGUGGGCAGUUUGACUGGGGCGGU-CGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGAC---CU-ACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUG-G--UUCCG---CAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUPUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGPPCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGA-GCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCA-UCGCUGGGUAGCUAU-GUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGA-UUUCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUUCC---------------GCAA----------------GGAA-GUAAGAUCCCUGAAAGAUGAUCAGGUUGAUA-GG-UCUGAGGUGGAAGUGUG--------GCGA----------CACAUGGAGCUGA---CAGA--UAC-UAAUCGAUCGA-GGACUUAACCAU---
rRNALSUAE001703Thermotoga maritimaprokaryotic cytosol -----GGUCAAGGUACUAAGGGCACGCGGUGGAUGCCUUGGCGGCGGGAGGCGAUGAAGGGCGUG--GCAAGCUGCGAUAAGCCCGGGG---------------------GAGCCGCAAGCAGGCGUUG-AUCCCGGG-AUUCC-CGAAUGGG-GAAACCUGGGUGGCC---guuga--g-GCCACUCGccgcc-------------GAA--A-------------ggc-ggUGCGACACCGGGGGAAGUGAAACAUCUCAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCUAGUAGCGGCGAGCGAACGGGGAGGAGCCCAAAccagcguggugucaaagcccgug-ggcguugccac-gcugggguugugggac------------------------------------------------------------------------------------------------------acggcc-gggcgaggccacggacucgccggggagu--uacaaa----uc--ccuccucuaGCCGAAC-CACCU-GGGA-AGGUGG----GCCGGAGAGGGUGACAGCCCCGUAGGCgaaaggggagggacucccug--ggccgu--gcuccc-------------------GAGUACCACGGGACACGUGGAAUCCCGUGGGAAGCUGGGGGG-ACCAC-CC-UCCAAGGCUAAAUACUACCCGCCGUCCGAUAGCGCACC-AGUACCGUGAGGGAAAGGUGAAAAGCACCCCgg-aaGGGGAGUGAAAGAGGACCUGAAACCGCGUGCCUACA-AGAAGUCGGAGCCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------au-uu---------------------------GGGGGUGACGGCGUGCCUUUUGAUUAAUGAGCCCGCGAGUUGCCGUCGGUGGCGAGGUUAAGCC----g-acgaa-G--GCG--UAGCCGUAGCGAAAGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGUCCGAACAGGGCGc-----------------------ucaGUCACCGGCGGCAGACCCGAAGCCGGGUGAGCUACCCCUGGGCAGGGUGAAGGUGGGUUAAAACCCACUGGAGGCCCG-AA-CCGGUG-G-ACAGUGAAAAGUCCUCGGAUGACCUGGGGGUAGGAGUGAAAAGCUAACCGAACCCGGUGAUAGCUGGUUCUCCCCGAAAUGCAUUGAGGUGCAGCCUCGGGCgg-ucug-------------------------------UGCAGGGGGUAGAGC-ACUGAUGGGGCUA----GGGGG--guuu----CCU-CCG-AACCCCGUCAAACUCCGAAUCCCUG-CA------------------------------------caca--aaGCCCGGGAGUGAGCCCGCGGGGGAUAAGCUCC-GCGGAC-GAGAGGGGAACAACCCAGACCGCCGGCUAAGGGCCCGAAGAG-GUGGCUAAG-UG------------GUAAAGGAUGUGGAGCGCCUAAGACAGCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGCCGAGGCGCUCUGCACCGAAAAUGUAACGGGGC-U-CAAGCCACCCCCCGAAGCCGCGGgucag-uaccucc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcu---ggagguacug--gcGGUAGGGGAGCU-UUCCGCUGU-AGGGUGAAGGCG-GAC-CCGCGAGGGCCGCUGGA-CGAGGCGGAAGUGAGAAUGCGGGCAUGAGUACGCG--AA-AGGAGGGUGAGAAUCCCUCCCCCCGUAA-GCCCAAGGGUACCUG-GGGAAGGUUCGUCCGCCCAGGGUUAGCCGGGACCCUAAGGUGAACCC-GAAA------------------------------------------------------------------------GGG-GUAGCCGAA-GGGAAGCCGGUUAAUAUUCCGGCGCcacc-u-gcgg-ucga-------------------------------------------------------ugguacgaggggugacgcag---gaggguaggcgcc---gggggca-ag--uggcaug-ccccu--ccaagcggu-uagggcgaug---acgg-gcguagguaaauccgcg-ccc-cga--gccuga--gccgugauggggagguccc--uucg--gggacc--aacggcgcugacccca--cacugc-c-gagaaaaaccucg----cgua--ccgcuugaga-c-cguaggugCCCGUUCCGCAAACCGACACAGGUGGGCGGGCU--GAGAA-GGCUCAGGGGAG-CGGGUU-AACCC-UCGCCAAGGAACUCGGCAAAUUGGCCCCGUAACUUCGGGAGAAGGGGUGCCGCGuuagggugaacccaggggaaggggcaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cccggaaacugggggagccc-gaGGCGGUCGCAGUGACAAGGCCCUGGCGACUGUUUACCAAAAACACAGGUCUCUGCUAACUC-GAAAAGAGGAAGUAUAGGGACUGACGCCUGCCCAGUGCCG-GAAGGUUAAGGGGAGGGGUGaggcuccccuugugggagcgu-AGCUCCGACCCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCAUGAAUGGCGUAACGACUGGGGCACUGUCUCGGCGGGGGGCCCGGCGAAAUUUCAGUCUGGGUGAAGAUGCCCAGUACCCGCGGCUAGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGGUAUUGGGC-UCUGGUGCAUCGUGUAUAGCAUAGGUGGGAGGCUGUGAAGCCGCCUC------------------------------------------------------GCCAGGGGCGGUGGAGCCGCCAGUGGAAUACCACCCUCGGUGC-ACUGGAGUCCUAACCUGACCCUGugaagagCAGGGUGG----------------------------------------------------------------------------------GGACAGUGCCAGGUGGGCAGUUUGACUGGGGCGGU-CACCUCCUAAAAGGUAACGGAGGUGUGCAAAGGUCGGCUCAGGUGGGUUGGAAAUCCACCGCAGAGUGCAAGGGCAUAAGCCGGCCUGACUGCGAGGC---CG-ACAGGCCGAGCAGGGGGGAAACCCGGCCCUAGUGACCCGGCG-G--UCCCG---UGUGGAAGGGCCGUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGCUGGUCCCGCCCGAGAGUUCACAUCGACGGCGGGGUUCGGCACCUCGAUGUCGGCUCAUCCCAUCCUGGGGCUGAAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGGGGUACGUGAGCUGGGUUCAGACCGUCGUGAGACAGGUCGGUCCCUAUCUGCCGCGGGCGUAGGAGGCUUGAGGGGG-GUCCUCCCUUGUACGAGAGGACCGGGAGGAGGGGGCCUCUGGUGUACCGGCUGUCGCGCCAGCGGCAuacGCCGGGUAGCUAC-GCCCCUAAGCGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCGCGCCCCAAGAUUAGG-CCUCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUCCCG--------------UUA----------------AGGGA-GUAAGGCCGGUCCGAGAAGAGGACCUUGAUA-GG-CCGGGGGUGUAAGCGCC--------GCAA-----------GCGUUGAGCCCA---CCGG--UAC-UAAUCGGCCGA-GGCCUUGACCUCC--
rRNALSUX12612Thermus thermophilusprokaryotic cytosol -----GGUCAAGAUGGUAAGGGCCCACGGUGGAUGCCUCGGCACCCG-AGCCGAUGAAGGACGUG--GCUACCUGCGAUAAGCCAGGGG---------------------GAGCCGGUAGCGGGCGUGG-AUCCCUGG-AUGUC-CGAAUGGG-GGAACCCGGCCGGCG----ggaa--C-GCCGGUCACCGCGC------------uuu--u------------GCGC-GGGGG-GAACCUGGGGAACUGAAACAUCUCAGUACCCAGAGGAGAGGAAAGAGAAAUCGACUCCCUGAGUAGCGGCGAGCGAAAGGGGACCAGCCUAAAccguccgg-----------cuugu---------ccgggcggggucgugggg-------------------------------------------------------------------------------------------------------cccucg-gac---------------------------accgaa----uc--cccagccuaGCCGAAG-CUGUU-GGGA-AGCAGC----GCCAGAGAGGGUGAAAGCCCCGUAGGCgaaagguggggggauagg----ugagggu---accc-------------------GAGUACCCCGUGGUUCGUGGAGCCAUGGGGGAAUCUGGGCGG-ACCAC-CGGCCUAAGGCUAAGUACUC-CGGGUGACCGAUAGCGCACC-AGUACCGUGAGGGAAAGGUGAAAAGAACCCCgg-gaGGG-AGUGAAAUAGAGCCUGAAACCGUGGGCUUACA-AGCAGUCACGGCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gc-aa----------------------------GGGGUUGUGGCGUGCCUAUUGAAGCAUGAGCCGGCGACUCACGGUCGUGGGCGAGCUUAAGCC------guuga-G--GCG--GAGGCGUAGGGAAACCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGUCCGAACAGGGCGcaagcgggccgcacgcggcccgc-aaaGUCCGCGGCCGUGGACCCGAAACCGGGCGAGCUAGCCCUGGCCAGGGUGAAGCUGGGGUGAGACCCAGUGGAGGCCCG-AA-CCGGUG-G-GGGAUGCAAACCCCUCGGAUGAGCUGGGGCUAGGAGUGAAAAGCUAACCGAGCCCGGAGAUAGCUGGUUCUCCCCGAAAUGACUUUAGGGUCAGCCUCAGGCGC-ugac-------------------------------UGGGGCCUGUAGAGC-ACUGAUAGGGCUA----GGGGGCCcacc--AGCCUACCA-AACCCUGUCAAACUCCGAAGGGUCC-CA-----------------------------------ggug---gaGCCUGGGAGUGAGGGCGCGAGCGAUAACGUCC-GCGUCCGAGCGCGGGAACAACCGAGACCGCCAGCUAAGGCCCCCAAGUC-UGGGCUAAG-UG------------GUAAAGGAUGUGGCGCCGCGAAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGGCGCCGCGCCGAAAAUGAUGCGGGGC-U-UAAGCCCAGCGCCGAAGCUGCGGgucug-ggg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gauga-----ccccag--gcGGUAGGGGAGCG-UUCCCGAUG-CCGAUGAAGGCC-G-ACCCGCGAGG-CGGCUGGA-GGUAAGGGAAGUGCGAAUGCCGGCAUGAGUA-ACG--AUAAAGAGGGUGAGAAUCCCUCUCGCCGUAA-GCCCAAGGGUUCCUA-CGCAAUGGUCGUCAGCGUAGGGUUAGGCGGG-ACCUAAGGUGAAGCC-GAAA------------------------------------------------------------------------GGC-GUAGCCGAA-GGGCAGCCGGUUAAUAUUCCGGCCCuucc-c-gcag-gu------------------------------------------------------------gcgauggggggacgcuc---uaggcua-ggggg--accggagc-ca--uggacgagcccggccagaagcgc--a-ggg--------uggg-agguaggcaaauccgcc-ucccaacaagcuc-u---gcguggugggga-agccc--guac--gggug-acaaccccccgaagccag--g-gagc-c-aagaaaagccucu----aagc--aca-----ac-c-ugcgggaacCCGUACCGCAAACCGACACAGGUGGGCGGGUGC-AAGAG-CACUCAGGCGCG-CGGGAG-AACCC-UCGCCAAGGAACUCUGCAAGUUGGCCCCGUAACUUCGGGAGAAGGGGUGCUCCC-----------------uggggugauga-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gccccg-----------------GGGAGCCGCAGUGAACAGGCUCUGGCGACUGUUUACCAAAAACACAGCUCUCUGCGAACUC-GUAA-GAGGAGGUAUAGGGAGCGACGCUUGCCCGGUGCCG-GAAGGUCAAGGGGAGGG----GU-----G-CAA-----GC-----CCCGAACCGAAGCCCCGGUGAACGGCGGCCGPAACJAPAABGGUCCUAAGGUAGCGAAAJUC?UUGUCGGGUAAGUUCCGAC?UGCACGAAAAGCGUAACGACCGGAGCGCUGUCUCGGCGAGGGACCCGGUGAAAUUGAACUGGCCGUGAAGAUGCGGCCUACCCGUGGCAGGACGAAAAGACCCCGUGGAGCUUUACUGCAGCCUGGUGUUGGCU-CUUGGUCGCGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCC------------------------------------------------------UCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGCGCG-GCUGGGGGCCUAACCC-UC-------ggau----GGGG----------------------------------------------------------------------------------GGACAGCGCUUGGCGGGCAGUUUGACUG#GGCGGU-CGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUCCCCUCAGGCGGGACGGAAAUCCGCCGGAGAGCGCAAGGGUAGAAGGGGGCCUGACUGCGAGGC---CU-GCAAGCCGAGCAGGGGCGAAAGCCGGGCCUAGUGAACCGGUG-G--UCCCG---UGUGGAAGGGCCAUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGCACCUCG:UGUCGGCUCGUCGCAUCCUGGGGCUGAAGAAGGUCCCAAGGGUUGGGCJGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAPCCGCCACGGGCGCAGGAGGCUUGAGGGGG-GCUCUUCCUAGUACGAGAGGACCGGAAGGGACGCACCUCUGGUUUCCCAGCUGUCCCUCCAGGGGCAUAAGCUGGGUAGCCAU-GUGCGGAAGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCCGCCCCAAGAUGAGG-CCUCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGC---------------gucaa---------------GCCG-GUAAGGACCCGGGAAGACCACCCGGUGGAUG-GG-CCGGGGGUGUAAGCGCC--------GCGA----------GGCGUUGAGCCGA---CCGG--UCC-CAAUCGUCCGA-GGUCUUGACCCCUC-
rRNALSUAJ248283Pyrococcus abyssiprokaryotic cytosol agggggucaggac--aCUAAGCCGCCCGGUGGAUGGCUCGGCUCGGGGCGCCGACGAAGGGCGUG--GCAAGCUGCGAUAAGCCCCGGC---------------------GAGGCGCAGGCAGCCGUC-GAACCGGGG-AUUCC-CGAAUGGG-ACCUCCCgcggc-------uuau------gccgcacuccggggc---------aua---a--------gccccgg-agggg-GAACGCGGGGAAUUGAAACAUCUUAGUACCCGCAGGAAAAGAAAGCAAAAGCGAUGCCGUGAGUAGGGGCGACCGAAAGCGGCACAGGGCA------------------------------------------------------aacugaaccccgggccgacgagguucgggggaugugggguugu-agggcc----------------------------------------------------cccgua-ug----------------------------agaccc----uc--gcgggugaaGCCGAAguccgcu-ggaa-cgcggc----gccggagaGGGUGAUAGCCCCGUAGGCguaagcccgcaggguc-----u--cggg--------ggacccu------------GAGUACCGUCGG-U-uggauaU-CCGGCGGGAAGCUGGGAGG-CAUCGGCU-CCCAACCCUAAAUACG-UCCCGAGACCGAUAGCGAACU-AGUACCGUGAGGGAAAGCUGAAAAGCACCCCgggagGGGG-GUG-AAAAGAGCCUGAAACCGGGCGGCGaua-ggagggugcggccc---gaaaggaauga--gccuccccgaaggaaaccgcg-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gc-ga-cgcgggaguacgaggggaggggaccg--ggguugcaccGUCCGUCUUGAAACACGGGGCAGGGAGUUCGCGGCCGUGGCGAGGUUAagggg-g---uuaagcc--ccg--uagccguAGGGAAACCga--------------------------------------------------------------------------------------------------------------------------------caugcccgcagccgggccucgagcccggugaggggcggGGUGCgaaa-GCGCCC-----------------------GGAGUCACGGCCGCGAGACCCGAAACCGGUCGAUCUAGCCCGGGGCAGGGUGAAGUCCCUCAACAGAGGGAUGGAGGCCCgcua-ggggug-cugaugTgcaguucgcucccguGACCCCGGGCUAGGGGUGAAAGGCCAAUCGAGGCCGGAGAUAGCUGGUUCCCGCCGAAUCAUCCCGCAGGAUGGCCUCCCCgga--GGUAG-----------------------------GCGGUGGGGUAGAGC-ACUGAUUGGGGGugc--AGGGGGCGAAA--GCCCC-CG-GCCCCCUGUCAAACUCCGAACCCACC-GCC-----------------------------------GCCguagaUGGGGGGAGUAG-GGUGGcGGUG-UAAG-CCGUCCACC--GAGAGGGGAACAACCCAGACCGG-GGUUAAGGCCCCAAAGUG-CCGGCUAAG-UGuuac-u------ccAAAGGGUGUCCCGGGCCUUAGACAGCGGGGAGGUAGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAACAGCUCACCCGUCGAGGUCCGGGGCCCCGAAAAUGGA-CGGGGC-UC-AAGCCGGCCGCCGAGACCCCGGcgcac-ggacc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gauu-g---guccgugaucgGGUAGGCGGGCG-UGCCGGU-G-GCGUAGAAGCCG-G-G-CCGUAAGGUCCGGUGGA-GCCGCCGGUAUCGCGGAUCCUGCCGGGAGUA-GCagcg-uaGUCGGGUGAGAAUCCCGACCGCCGGAG-GGGCCAGGGUUCCACAGGCAAUGGUCGUCAGCCGUGGGUUAGUCGG--UCCUAACCCCGCCCGUAACU------------------------------------------------------------------------CGGCGCGGGGGAAAGGGAAACGGGUUaAUAUUCCCGUACcgcg-g-gggu-ag------------------------------------------gugcggcaacgcaag---cccggagggugacgccu---cggggua-ggcgg-accggc-c----gauga----g-gccgg-cuaagcguauaagcc----C---GGGG-AGUG-CCGUAAUGGCGA-GAACCG----ggugaa-agcgcgaaug-gc-ccccc--guua--ggggg--guu-ccgccgaucccug----gggc-ccgugaaaagcccuc----cggg--aauuc---cg-aucccccgcgACCGUACCGAGAACCGACACAGGUGCCCCUGGG-ugagaagCCUAA-GGCGUGUCGGGGGAAACCC-GGCCGAGGGAACUCGGCAAACUGGCCCCGUAACUUCGGGAGAAGGGGUGCCUGC---gggu----------------gcgua---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------accc---GCAGGUCGCAGUGACUAGGGGGGCCCGACUGUUUAAUAAAAACACAGGUCCCAGCUAGCCC-GAAA-GGGUUUGUACUGGGGCCGACGCCUGCCCAGUGCCG-GUAUGUGAA----gcccggg--------u-aca---------accggg----UGAAGCACCGGUAAACGGCGGGGGUAACUAUAACCCUCUUAAGGUAGCGAAAUUCCUUGUCGGUUAAAUGCCGACCUGCAUGAAUGGCGUAACGAGGUCCCCGCUGUCCCCGGCCGGGGCCCGGCGAAACCUCUG-CCUGGCGCGCAUGCCAGGGACCCCCGGUGGGAAGCGAAGACCCCAUGGAGCUUUACUGCAGCCUGCCGUUGCCA-CGCGGCGAGGGGUGCGCAGCGUAGGCGGGAGGCGUCGAAGCCCGGCC------------------------------------------------------UCCGGGUCGGGUGGAGCCGUCCAUGAGACACCGCCCACUCCUC-GCCGCGUGGCuaac-----cccc---gaaagggg--------------------------------------------------------------------------------------ggacAGCGGUAGGUGGGCAGUUUGGCUGGGGCGGCACGCCCCCGAAAAGGUAUCGGGGGCGCCCUAAGGUCGGCUCAGGCGGGUCAGGAAUCCGCCGUAGAGUGCAAGGGCAAAAGCCGGCCUGACUGGACCCGuaaca-gaggCGGGUCCAGCCCCGAAAGGGUGGCCUAGCGAACCCCUGUG--C-CUC-c-ccggugGGGGCCAGGG-augacaga--aAAGCUACCCUGGGGAUAACAGAGUCGUCUCGGGCGAGAGCCCAUAUCGACCCCGAGGCUUGCUACCUCGCUGUCGGCUCUUCCCAUCCUGGCCCUGCAGCAGGGGCCAAGGGUGGGGGUGUUCACCCAUUAAAGGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUCGGAUGCUAUCUACCGGGGGUGUUGGCCGCCUGAGGGGAAGGUGCCCUUAGUACGAGAGGAACAGGGCGCCGCGGCCUCUGGUCUACCGGUUGUCC-UCCC-GGGCA-ucGCCGGGCAGCUAC-GCCGCA-GCCGAUAAGGCCUGAAGGCAUCUAAGGCCGAAGCGGCCCCCGAAAAUAGG-CGGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------guucccuggcguugggcuugggcga-ccggcccguuagccaggga--cgagggcUCGGGUAGAAGACCCGGUUGAUG-GG-GCGGGGAUGUAAGCGGGaagg----gucaa-----ccgaCCCGCUUAGUCUG---CCGC--CCC-CAaucgcccgag--guccugucccccg
rRNALSUU32322Sulfolobus solfataricusprokaryotic cytosol --acgacuaggggc-ACCAAGCCAGCCGGUGGAUGGCUCGGCUCGGG-CGCUGACGAAGGGCGCG--GCAAGUGGCGAAAUGCCCGGGG---------------------UAGGCACACGCUGCCUUU-GAACCCGGG-AUUCCCCGAAUGG--GAC--CUgcccc--------uuu------ggggcgcacccgacuc--------gnnn-a--------gagucggg-uguGG-GAACUCCCCGAACGGAAACAUCUUAGUAGGGGAAGGAGGAGAAAUCAACCGAGAUCCCCUGAGUAGGGGCGACCGAAAGGGGGAUAGCCCA------------------------------------------------------aaccaaacccgccgccggcaagucggugggaaugugguguuauuggccuc----------------------------------------------------cagucu---ggu---u-uaaagcc-------------ggccuc----ccuggccuaccuaGCCGAAcucuccu-ggaa-uggagg----gccauagaGGGUGACAGCCCCGUAGGCuaaagguaggugggag-----gugacug--------ga-ggca------------GCGUACCAUCCCC---ugguucGGGGGUGGGAAGUUGGGGGC-CACGUGCC-UCCAAGGCUAAAUACGU-CCCGAGACCGAUAGCGAACUAAGUACCGUGAGGGAAAGCUGCAAAG-ACCCCGGAAGGGGG-GUG-AAAAGAGCCUGAAACCGGCUGGUCauaguag-ggcaaggcuc---gaaagga--gugaagucucccgaaggaaagaggc-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gc-na-gccu--aguacgagggagauggaccg--gggucuugccUUUCGUCCUGAAACACGGGCCGGGGAGUUCACGCCAGUGGCGAGCCUAAgggg-----guuaacc--ccG--AAGGCAUAGGGAAACCGa--------------------------------------------------------------------------------------------------------------------------------g-ugcccgcagcccgg-gaaa--ccnggugaggggcagGGUCUgcca-GGGCCU-----------------------AAAGUCACUGGCGUGAGGCUAGAAACCGGGCGAUCUAGGCCGGGGCAGGCCGAAGCCGGGGGAAACCUCGGUGGAGGGCCGnnuagggguu-cugacgugcaauucguuccccuGACCCCGGUCUAGGGGCGAAAGACCAAUCUAGCUCGGUGAUAGCUAGUUCCCCCCGAAAUGCGUCCUAGCGCAGCCUUCCUgga--GGUUG-----------------------------CCUACGGGGUAGAGUAACUGAUUGGGGGU----UCGGAGCGAAA--GCUCC-GG-GCUUCCAGUCAAACUCCGAACUCGUA-GGC-----------------------------------GCCgaagaaGGGGAGAGUGGGCCACUCGGCG-UAAGGUUG-GGUGGC-GAAAGGGAAACAGCCCAGACUUG-GGUUAAGGCCCCAAAAUG-CCGGCUAAG-UGcc--ag------uuAAGGGGCGUCUCUAGCCUUAGACAGCGGGAAGGUGGGCCCAGCAGCAGCCAUCCUCUAAGGAGUGCGUAACAGCUCACCCGCCGAGGCUAGAGGCCCCGAAGAUUGGUCGGGGC-UU-AAGCCGGCUGCCGAGACCCAAGcgugg-aggcu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cauuga---gucucca--ugGGUAGGGGGGCG-CUGUGGU-G-GGGUAGAAGGUG-G-G-UCGUGAGAUCCACUGGA-CCCGCCACAGGUGCAGAUCCCGGCGGCAGUA-ACagcg-agGAGGGGUAAGACUCCCCUCCGCCGGAA-GGGCUAGGGUUUCCC-GGCAAUGGUCGUCAGCCGGGAGUGAGCCGG--UCCUAAGGCGAGGCCUAAUA------------------------------------------------------------------------GGUACUCGCCGAAAGGGAAGUGGGUUAAUAUUCCCACGCccua-g-gggu-ag------------------------------------------gcgcgguaacgcaag---cuggacuccugacggau---cugggua-gggug--aguggg-g--c-cacc-gc--cccauc--caagcgcuuaaguc----C---CUGG-AGUG-CCGUAAUGGUGA-GAAGGG----gacgaa-ggcgugaug-ggn-guucc--cuuu--gggga--cuu-cacccaaucccag----guuc-ccuugaaaagggagu----ccag--aa------cg-auccccuaggACCGUACCGAGAACCGACACUGGUGCCCCUGGG-ugagaagCCCAA-GGCGUCUGGGGGUUAACUC-AGGCUAGGGAACUCGGCAAAAUAGCCCCGUACCUUCGGUAGAAGGGGUGCCUAC---uggggu--------c-g---uaaac--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cg---------gccuca---GUAGGUCGCAGUGACAAGGGGGACCUGACUGUUUAAUAAAAACAUAGGUCCCCGCUAGCCC-GAAA-GGGUGUGUACGGGGGCUAAAUCCUGGCCACUGGUG-GAUGGUGAA----agccggg--------u-cca---------accggu----cGAAGCCCCACUGAAGGCCGGGGGUAACUCUGACCCUCUUAAGGUAGCCAAAUGCCUUGCCGGGUAAGUUCCGGCGCGCAUGAAUGGAUCAACGUGGUCCCUACUGUCCCAGCCUGGGGCCCCGUGAACGCCCAGAGUGGGUUCACAGUCCCGCAACUCCCCACACCGAGAGAAGACCCCGUGGAGCUUCACCGCAGCCUGGCGCUGCUC-CUCGGGCGCCUAUGCGUAGAGUAGGUGGGAGGGGUCGAACCCAUCCU------------------------------------------------------UUCGGGGAUGGGGGACCCGAAGGUGAAACACCACCCAUGGGUG-CUCGAGGAGCuuac---cugccc---nnnngggugg------------------------------------------------------------------------------------ggacAGCGUCAGGUGGGCGGUUCGGCUGGGGCGGCACUCCCGCGAAAAGAUAACACGGGAGCCCAAAGGUCGGCUCAGGCGGUACAGAACGCCGCCGUGGAGUGCAAGGGCAAAAGCCGGCUUGACGAGACCCUccaaa-guacGGGGUCUCGACGCGAAAGCGCGGCCUAGCGAACGCUCGUG--C-CCCcc-cacgugGGGGCCGGGC-augacaga--aAAGUUACCCCGGGGAUAACAGGGUCGUCGCGGGCGAGAGCUCCCAUCGACCCCGCGGUUUGCUACAUCGAUGUCGGCUCUUCCCACCCUGGGGGUGCAGCUGCCCCCAAGGGUAGGGCUGCCCGCCCGUUAAAGGGGAACGUGAGCUGGGUUUAGACCGUCGCGAGACGGGUCGGACUCUAAGGGUGGGGAGUGUGGGCUGCCUGAGGGGAAGGUACCCCAAGUACGAGAGGAACAGGGUACCGGGGCCUCUAGUUUACCGGUUGUCC-GGUA-GGGCA-CUGCCGGGCAGCCAC-GCCCUG-UGGGGUAACCGCUGAAAGCAUCUAAGCGGGAACCCCUCCCCGAAAAGAGG-CAGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------a-ugcggg-------------guuaa-------------cccgcg--agagcccACCUCUAGAAGAGGGGGUUGAUG-GG-NNCGGGGUGUAAGUCCCgagggc--gaaa----guccgaGGGAUUUAGCCCG---CGCC--UCC-CAaucgggcaag--ccc-ucuu-----
rRNALSU-LX52322Arabidopsis thalianacytosolic ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------a----gcgaccccaggucagg-cgGGA-UUACCCGCUGAGUUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACUAACAAGGAUUCCCUUAGUAACGGCGAGCGAACCGGGAAGAGCCCA---------------------------------------------------------------------------------------------------------gcuugaaaaucggacgucuucg-g-cguucgaauuguagucuggagaagcguccuca--------------------------------------gcgac---ggaccgggcc-uaag-uucccuggaaagggg-c----GCCAGAGAGGGUGAGAGCCC-GUCg-ugcccggacccugucgc-----accac---------------gaggcgcugucuacGAGUCGGGUUGUU---UGGGAAUGCAGCCCCAA-ucGGGCGGUAAAUUCCG-UCCAAGGCUAAAUACGGGCGAGAGACCGAUAGCGAACA-AGUACCGCGAGGUAAAGAUGAAAAGGACUUUga-aaAGAGAGUCAAAGAGUGCUUGAAAUUGUCGGGAGgg---aagcggauggggg-cc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggcgaugcguccuggucgg--augcggaacgga-gcaa--uccgg-uccgccgau--cgauucggggcguggaccgacgcggauuacggu-ggcggccuaagcc--cgggcuu-----------------uugau---------------------acgcuug-uggagacgucg-cugc-cgugaucguggucugcagcacgcgccuaacggc---gugc--cucg---gcauca-gcgugcuccgg--------------------------------------gcgucggccugu-ggg-------------------------c--uccccauucgACCCGUCUUGAAAC:CGGACCAAGGAGUBUGACAUGUGUGCGAGUCaacgg-gu---gaguaa--acccgu-aaGGCGCAAGGAAGCUGA------------------------uuggcgggaucc----------ucgcg--------ggugcaccgccg-------------------accgaccuugauc---uucu---gagaagggPJcgagu-----------------------------------------------------G-----------------------UGAGCAUGCCUGUCGGGACCC#A:AGAUGGUGA:CPAUGCCUGAGCGGGGUAAAGCCAGAGGAAACUCUGGUGGAAGCCCG-CA-GCGAUACU-G:CGUGCAAAUCGUUCGUCUGACUUGGGUAUAG#GGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCU---c---gga---------------------cgcgaguUCUAPCGGGUAAAGCCAAPGAUUAGAGGC--AUUGGGGGCgcaa-cG-CCU-CGA-CCUAUUCUCAAACUUUAAAUAGGUA-GGacgugucggcugcuuuguug-agccgucacacgg-AAUcg--agAGCUCCAAGUGGGCCAUUUUUGG-UAAGC:GA-ACUGGC-GAUGCGGGAUGAACCGGAAGCCG-GGUUACGGUGCCCAACUG-CGCGCUAACcua------gaacccacAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAA:UCCGCUAAGGAGUGJGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUG-GCGCUU--AAGCG--CGACCUAUACCCGGCcgucg-gggca-agagcca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggccucga--ugAGUAGGAGGGCG-CGGCGGU-C-GCugcAAAACCUAG-G-GCGCGAGGC---GCGGA-GCGGCCGUCGGUGCAGAUBUUGGUGGUAGU:-#CA--AAUAUUCAAAUgagaaCUUUGAAGGCCGAAGAGGGGAAAGGUUCCAU-GUGAACGGBACUUGCACAUGGGUUAGUCGA--UCCUAAGA-------------gucgggggaaa-ccc-guc--ugauag--cgc-------------uuaa--------------gcgaacu---------UCGAAAGGGGAUCCGGUUAAAAUUCCGGAACcggga-cgugg-cgguug-----acggcaacgu-----------------Jag---------------------ggaguccggagacgucggcgggggc----cucg--GGAAGAGU--U--AUC-UUU-UCUGUU-UAA-cagcc-ugccc-----a-CCCUGGAAAC-GGCUCAGCCGGAGGUAGGG---uccag--cggcugGAAGAGCA-CCGCA-cg-ucg-CGUGG--UGUCcgg--ugcgcccccgg-gcgcCC-UUGAAAAuccggaggaccgag--ug-c----cgcu-cacgcccgGUCGUACUCAUAACCGBAUCA#GUCUBCAAGGU--GAAC:-GCCUCUGGUCGA-UGGAAC-AAJGUA-GGCAAGGGAAGUCGGCAAAAUGGAUCCGUAACJUCGGGAAAAGGAUUGGCUCUGAG-------------------------ggcugggcucggggg-----------ucccaguu-ccgaacccgucggcu-gucagcggacugcucgagcugc---------uucc--------gcggcgagagcgggucgccggc---ugcc-ggcc-gggggac--gacugggaac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggcucu--cucg-ggagc-uuuccccgggcgucgaacagucag--------------------CUCAGAACUGGUACGGACAAGG#G:AUCCGACUGPUUAAUUAAAACAAAGCAUUGCGAUGGUCC-cugc-GGAUGCUAACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGPCAA----agugaa---------g-aaa----------uucaa----CCAAGCGCGGGUAAACGGCGGGAGPAACPAPGACUCUCUUAAGGUAGCCAA:UGCCUC#UCAUCUAAUUAGUGACGCGCAUGAAPGGAUUA:CGAG:UUCCCACUGUBCCUGUCUACUAPCCAGCGAAACCaca-gBCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGJUGA#CUUGACJCUAGUCCGACUUUG-UGAAAUGACUUGAGAGGUGUAGGAUAAGUGGGAGC---------------------------------------------------------------------UUCG------------GCGCAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAc------------------------uccgugaaucggagg--ccgggguaca-acccc--uguuuuuggucccaaggcucgc-uucg-gcgggucgauccgggcggagGACAUUGUCAGGUGGGGAGUUUGGCUG#GGCGGCACAUCUGUUAAAAG:UAACGCAGGJ#UCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAAAAGGGUAAAAGCUCGUUUGAPUCUGAUUU---ucaguacGAAUACGAACCGUGAAAGCGUGGCCUAUCGAUCCUUUA-Ga-C-UUC--GGAAUUPGAAGCUA#A#-GUGUCAGA--AAAGUUACCACAG#GAUAACUGGCPUGUGGCAGCBAAGCGUUCAUAGCGACGUUGBUUUUUGAUBCUUCGAUGUCGGBPCUJCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUU#GAUUGPUCACCCACCAAUAGGGAACGUG:GBUGG#JUUAGABCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGCC---cGCGUCGCGAUAGUA-AUUCAACCUAGUACGAGAGGAACCGUUGAUUCGCACAAUUGGUCAUCGCGCUUGGUUGAAAAGCCAG-UGGCGCGA-AGCUACCGUGCGC--UGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCGGGCUA--g-aaGCG-ACGCA----ugcgcccgccgcccgauugccgacccucaguag-gagc-uuag--gcuc--caaaggcacguguc-guuggcuaa----guc-cguucggc-ggaacg-gu-cg-uucggac-cgccuu--gaa-uuauaauuaccaccga------------------------------------------------------------------------------------gcggcggg-------------------------------------------------uagaauccuuugcagacgacuuaaauacgc-gacgggguauuguaaguggcagaguggccuu-gcugccacgauccacugagauucagcccuuugu-c-gcuaagauucga---------------
rRNALSU-SX52322Arabidopsis thalianacytosolic ------------aaaaCGACUCUCGGCAACGGAUAUCUCGGCUCUCGCA-UCGAUGAAG:ACGUA--GCGAAAUGCGAUACUUGgugu-gaauP#cagaaucccgugaac-----------------------caucgAGUCUU-UGAACGC-aaguu-gcgccccaa-gc--cuucuggccgagggcacgucugccugggugucaca
rRNALSU-LJ01866Homo sapienscytosolic --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cgcgaccucagaucaga-cgUGG-CGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAAAAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCA--------------------------------------------------------------------------------------------------------gcgccg--aauccccgccccgcggggcgcgggacauguggcguacggaagacccg--cuc-----------------------------cccggcgccgcu--cguggggggcc-caag-uccuucugaucgagg-cccagCCCGUGGACGGUGUGAGGCCGGUAg-cggcc---ggc-gcgc-------------------------gcccgggucuucccgGAGUCGGGUUGCU---UGGGAAUGCAGCCCAAA-GCGGGUGGUAAACUCCA-UCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACA-AGUACCGUAAGGGAAAGUUGAAAAGAACUUUga-agAGAGAGUUCAAGAGGGCGUGAAACCGUUAAGAGgu---aaacgggugggguccg-cgca--guc-cgcccggaggauucaacccggcggcggguccggccgugucggcggcccggcggaucuuucccgccccccguuccucccgaccccuccacccgcccucccuucccccgccgccccuccuccuccuccccggagggggcgggcuccggcgggugcgggggugggcgggcggggccggggguggggucggcgggggaccgucccccggaccggcgaccggccgccgccgggcgcauuuccaggcggugcgccgcgaccggcuccgggacggcugggaaggcccggcggggaagguggcucggggggccccguccguccguccguccuccuccucccccgucuccgccccccggccccgcguccucccucgggagggcgcgcgggucggggcggcggcggcggcggcgguggcggcggcggcgggggcggcgggaccgaaaccccccccgaguguuacagcccccccggcagcagcacucgccgaaucccggggccgagggagcgagacccgucgccgcgcucuccccccucccggcgcccacccccgcgggaauccccgcgaggggggucucccccggcgcggcgccggcgucuccucguggggggg-ccgggccaccccucccacggcgcgaccgcucuccc-accccu-ccucccc--gcgcccccgc-cccggcgacggggggggugccgcgcgcgggucggggggcggggcggacuguccccagugcgccccgggcg-ggucgcgccgucgggccc-ggggga-------------------------------gguucucucggggccacgcgcgcgucccccgaagagggggacggcggagcgagcgcacggggucggcggcg-------acg-ucg-------------------------gcua-cccacccgACCC#UCUUG"AAC:CGGACCAAGGAGUBUAACACGUGCGCGAGUCGgggg-cu-cgcacgaa--agccgccgUGGCGCAAUGAAGGUGAaggccggcgcgcucgccggcc---gaggugggaucccgaggccucuccaguccgccgaggggcaccaccggcccgucucgcccgccgcgc------------cggg-gaggugg-----------agc-----------------------------------------------------A-----------------------CGAGCGCACGUGUUAGGACCC#A:AGAUGGUGA:CPAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCG-PA-GCGGUCCU-GACGUGCAAAUCGGUCGUCCGACCUGGGUAUAG#GGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCPCAGGAPAGCUGGCGCUc------ucgcagacccgacgcacccccgccacgcaguUUUAUCCGGUAAAGCGAAPGAUUAGAGGU--cUUGGGGCCgaaa-cGAUCU-CAA-CCPAUPCUCAAACUUPAAAUGGGUA-AGaagcccggcucgcuggcgug-gagccggg-gugg-aaugc---gAGUGCCUAGUGGGCCACPUPUGG-UAAGC:GA-ACUGGC-GCUGCGGGAUGAACCGAACGCCG-GGUUAAGGCGCCCgaugCCGACGCUCAU-ca------gaccccagAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGAAAAUGGAUG-GCGCUG--GAGCGUCGGGCCCAUACCCGGCcgucgccggc-agucgagaguggacgggagcggcgggggcggcggcgcgcgcgcgcguguggugugcgucggagggcggcggcggcggcggcggcgggggugugggguccuucccccgcccccccccccacgccuccuccccuccucccgcccacgccccgcuccccgcccccggagccccgcggagcuac---------gccgcga--cgAGUAGGAGGGCCgBUGCGGu-gaGCCUuGAAGCCUAG-G-GCGCGGGCCCGGGUGGAGGCCGCCGCAGGUGCAGAUBUUGGUGGUAGU::#BA--AAUAUUCAAACgagaaCUUUGAAGGCCGAAGUGG:GAAGGGUUCCAU-GJGAACAGBA#UUGAACAUGGGUCAGUCGG--UCCUGAGA------------gau-gggc-gagc--gccguuccgaagg-gacgggcgauggccuccguugccc-ucggccga------------------PCGAAAGGGAGUCGGGUUCAGAUCCCCGAAUccgga--guggcggagau-gggcgccgcgaggcguccagugcgguaacgcgac---------------------cgaucccggagaagccggcgggagc----cccg--GGGAGAGU--U--CUC-UUU-UCUUUG-UGA-agggc-a-ggg----c-gCCCUGGAAUG-GGUUCGCCCCGAGAGAGGG---gcccgu--gccuuGGAAAGCG-UCGCG-guucc--GGCGG--CGUCcgg--ugagcucucgc-uggcCC-UUGAAAAuccgggggagaggguguaaa----uc-u-cgcgccgggCCGUACCCAUAUCCGCAGCAGGUCUBCAAGGU--GAAC::GCCUCUGGBAUguUGGAAC-AAJGUA-GGUAAGGGAAGUCGGCAAGCBGGAUCCGUAACUUC#GGAUAAGGAUUGGCUCUAAG-------------------------ggcugggucggucgggcuggggcgc---------gaagcggggcugggcgcgcgccgcggcuggacgag-gcgc-gcgcccc--ccccacgcccg-gggcaccccc-cucgcggcccucccccgccccacccgcgcgcgccgcucgcucccuccccaccccgcgcccucucucucucucucucccccgcuccccguccuccccccuccccgggggagcgccgcgugggggcgcggcggggggagaagggucggggcggcaggggccgcgcggcggccgccggggcggccggcgggggcagguccccgcgaggggggccccggggacccggggggccggcggcggcgcggacucuggacgcgagccgggcccuucccguggaucgccccagcugcggcgggcgucgcggccgcccccggggagcccggcggcggcgcggcgcgccccccacccccaccccacgucucggucgcgcgcgcguccgcugggggcgggagcggucgggcggcggcggucggcgggcggcggggcggggcgguucguccccccgcccuacccccccggccccguccgccccccguuccccccuccuccucggcgcgcggcggcggcggcggcaggcggcggaggggccgcgggccggucccccccgccggguccgcccccggggccgcgguuccgcgcg-cgcc-ucgc--cucggccggcgccuagcagccga--------------------CUUAGAACUGGUGCGGACCAGGGGAAUCCGACPGPUUAAUUAAAACAAAGCAUCGCGAAGGCCCgcggc-GGGUGUUGACGCGAUGUGAUUPCUGCCBAGUGCUCUGAAUGPCA:---:aguga:--------:g-aaa----------uPcaa----PGAAGCGCGG#UAAACGGCGGGAGPA:CPAPGACPCPCUUAAGGUAGC?AA:UGCCUCGUCAUCUAAUUAGUGABGCGCAUGAAZGGAPGA:CGAG:UUCCCACUGUBCCPACCUACPAPCCAGCGAAACCac::gBCAAGGGAACGGGCUPGGBGGAAUCAGCGG#GAAAGAAGACCCUGUUGAGCPUGACJCUAGUCUGGCACGG-UGAA#AGACAUGAGAGGUGPAGAAUAAGUGGGAGGCCcc-----------cggcgcccccccgguguccccgcgaggggcccggggcgggguccgcggcccugc-------------gGGCCGCC#GUGAAAUACCABUACUCUGAUCGUUUUUUCACUGAc------------------------ccggugaggcgggggggcgagccc-gaggggcucucgcuucuggcgccaagcgcccgcccggccgggcgcgacccgcuccgggGACAGUGCCAGGUGGGGAGUUUGACUG#GGCGGUACACCUGUCAAACGGUA=CGCAGGJ#UCCUAAGGCGAGCUCAGGGAGGACAGAAACCUCCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAPCUPGAPUU---ucagJacGAAPACAGACCGUGAAAGCGGGGCCUCACGAUCCUUCU-GacC-UUP-PUGGGUUUPAAGCAGGA##gugucaGA--AAAGUUACCACAG#GAUAACUGGCPUGUGGCGGCCAAGCGUPCAUAGCGACGPCGCUUUUUGAP?CUUCGAUGUCGGBPCUUCCUAUCAUUGPGAAGCAGAAUUCGCCAAGCGUU#GAUJ#PUCACCCACUAAUAGGGAACGPG:GCUGGGδPUAGABCGUCGUGAGACAGGUPAGUUUUACCCUACUGAPG:u-guGPUGPUGCCAUGGUA-:UCCUGCUCAGUACGAGAGGAACCGCAG#UJCA#ACAUPUGGUGUAP#UGCUUGGCUGAGGAGCCAA-UGGGGCGa-AGCUACCAPCUGu--GGGAUUAUGACPGAACGCCUCUAAGUCAGAAUCCCgCCCA----g-GCGaACGAUacggcagcgccg-cggagccucgguuggccucggau-agccggucccccgccuguccccgc-cggcgggccgccccccccuccacgcgc-ccc-gccgcgggagggcgcgugccccgccgcgcgccgggac-cgggguccggugcggagugcccuucguccugggaaacggggcgcggccggaaaggcggccgcccccucgcccgucacgcaccgcacguucguggggaaccuggcgcu-------------------------------------------------aaaccaPPcguagacgaccugcuuc-ugggucggggPuucguacgPagcagagcagcucc-cucgcugcgaucuauugaaagucag-cccucga-cacaa-ggguuuguc--------------
rRNALSU-SJ01866Homo sapienscytosolic ----------------CGACUCUUAGCGGJGGAUCACUCGGCUCGUGCG-UCGAUGAAGAACGCAgcGCUAGCPGCGAGAAUUAaugP-gaauu#caggacacauugau------------------------caucgACACUU-CGAACgc-acuu--gcggccccg-gg--uuccu-cccggggcuacgccugucugagcgucg-cuu
rRNALSU-LU53879Saccharomyces cerevisiaecytosolic -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------guuugaccucaaaucagg-uaGGA-GUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCA---------------------------------------------------------------------------------------------------------aauuugaaaucugguaccuuc--ggugcccgaguuguaauuuggagagg-gcaacuuu------------------------------------ggggcc---guuccuuguc-uaug-uuccuuggaacagga-c----GUCAUAGAGGGUGAGAAUCCCGUGu-ggcgaggagug-cgguu-----cu--uug--------u---aaagugcc-uucgaaGAGUCGAGUUGUU---UGGGAAUGCAGCUCUAA-GUGGGUGGUAAAUUCCA-UCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACA-AGUACAGUGAUGGAAAGAUGAAAAGAACUUUga-aaAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGgg---aagggcauuugau-ca----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gacaugguguuuugug---cc-cucugcuc-cuugu-gggua-ggggaaucu--cgca-uuu-cacugg-gccagca-ucaguuuug-guggcaggauaaa--uccauaggaauguagcuugc----cucg------guaaguau-uaua-gccuguggg---aauacugccagcug-ggacugaggacug--cgac-------------guaa-------------------guca------------------------------------------aggaugcuggc--auaa-----------------------------ugguuauaugccGCCCGUCUUG"AAC:BGGACCAAGGAGUBUAACGUCUAUGCGAGUGUuugg-gu----guaaa--accca--uACGCGUAAUGAAAGUGA---------------------acguagguuggg-gccuc-------gcaa------gaggu-gcacaaucg-------------------accgauccugaug--ucuu----cggauggaPuugagu-----------------------------------------------------A-----------------------AGAGCAUAGCUGUUGGGACCC#A:AGAUGGUGA:CUAUGCCUGAAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCG-UA-#CGGUUCU-G:CGUGCAAAUCGAUCGUCGAAUJUGGGUAUAG#GGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCPCAGGAPAGCAGAAGCUc----gu------------------------auc-aguPUUAPGAGGUAAAGCGAAPGAUUAGAGGU--UCCGGGGUCGAAA-UGACCU-UGA-CCUAUPCUCAAACUUPAAAPAUGUA-AGaaguccuuguu-acuuaauugaacguggacauuugAAUga--agAGCUUPUAGUGGGCCAUUUPUGG-UAAGC:GA-ACUGGC-GAUGCGGGAUGAACCGAACGUAG-AGUUAAGGUGCCGGAAUA-CACGCUCAU-ca------gacaccacAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUG-GCGCUC--AAGCGUGUUACCUAUACUCUACcguca-gggu--ugauaugau-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcccuga--cgAGUAGGCAGGCG-UGGAGGu-cAGUgacGAAGCCUAG-A-CCGUAAGGUCGGGUCGA-ACGGCCUCUAGUGCAGAUBUUGGUGGUAGUA:#CA--AAUAUUCAAAUgagaaCUUUGAAGACUGAAGUGGGGAAAGGUUCCAC-GUCAACAGCAGUUGGACGUGGGUUAGUCGA--UCCUAAGA-------------gauggggaagc-ucc-guu---ucaaag-gccug-----------auuuuaug--------caggccacca--------UCGAAAGGGAAUCCGGUUAAGAUUCCGGAACcugga-uaugg-auucuuc----acgguaacgu-----------------aac---------------------ugaauguggagacgucggcgcgagc----ccug--GGAGGAGU--U--AUC-UUU-UCUUCU-UAA-cagcu-u-auc----a--CCCCGGAAUU-GGUUUAUCCGGAGAUGGGG---ucuuau--ggcugGAAGAGGC-CAGCA--ccuu--UGCUG--GCUCcgg--ugcgcuuguga-cggcCC-GUGAAAAuccacaggaaggaa--uagu----uu-u-caugccaggUCGUACUGAUAACCGCAGCAGGUCUCCAAGGU--GAACA-GCCUCUAGUUGA-UAGAAU-AAJGUA-GAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAG-------------------------ggucggguagugagg----------gccuugguc--agacgcagcgggcg-ugcuugu-ggacugcuuggugggg-------cuug-------cucugcuaggcggacuacuugcg---ugccuug-u-uguagac-ggccuuggua--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggucu-cuugu-agaccgucgcuugcuacaauuaacgaucaa--------------------CUUAGAACUGGUACGGACAAGGGGAAUCPGACPGUCUAAUU"AAACAUAGCAUUGCGAUGGUCAgaaag-UGAUGUUGACGCAAUGUGAUUPCUGCCBAGUGCUCUGAAUGUCAA----agugaa--------:g-aaa----------uucaa----CCAAGCGCGGGUAAACGGCGGGAGUA:CPAPGACPCPCUUAAGGUAGC?A::UGCCUC#UCAUCUAAUUAGUGACGCGCAUGAAPGGAUUAACGAGAUUCCCACUGUBCCPAUCUACJAPCPAGCGAAACCaca-gCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCPJGACJCUAGUUUGACAUUG-UGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGC---------------------------------------------------------------------UUCG------------GCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAu------------------------ucaaugaagcggagc---uggaauucauuuucca--cguucuagcauucaagguccc-auuc-ggggcu-gauccggguugaaGACAUUGUCAGGUGGGGAGUUUGGCUG#GGCGGCACAUCUGUδAAACG:UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGCCCCCUUGAUUUUGAUUU--JucagJguGAAPACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUA-GucC-CUC--GGAAUUUGAGGCUA#AG#GUGCCAGA--AAAGUUACCACAG#GAUAACUGGCPUGUGGCAGUCAAGCGUδCAUAGCGACAUUGCUUUUUGAPUCUU?GAUGUCGGCPCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUJ#PUCACCCACUAAUAGGGAACGPG:GBUGGGUUUAGABCGUCGUGAGACAGGUPAGUUUUACCCUACUGAUGAA--uGUUACCGCAAUAGUA-AUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGGCUGUCUGAUCAGGCAU-UGCCGCGA-AGCUACCAUCCGC--UGGAUUAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCUA--gaacGCG-GUGAUuucuuugcuccacaca--auauagauggauacgaauaaggcguccu-uguggcgucgcugaa--c-cauagcaggcuagcaacggugcacuuggc-ggaaag-gc-cuug-ggugcuugcuggc-gaa-uugcaaugucauuu--------------------------------------------------------------------------------------ugcgugggga------------------------------------------------uaaaucauuuguauacgacuuagauguac-aacgggguauuguaagcaguagaguagccuu-guuguuacgaucugcugagauuaag-ccuuugu-u-guc-ugauuugu---------------
rRNALSU-SU53879Saccharomyces cerevisiaecytosolic ----------------AAACUUUCAACAACGGAUCUCUUGGUUCUCGCA-UCGAUGAAGAACGCA--GCGAAAUGCGAUACGUAaugu-gaaPugcagaauuccgugaau-----------------------caucgAAUCUU-UGAACgc-acauu-gcgccccuu-gg--uauu--ccagggggcaugccuguuugagcguca-uuu

Explanation:

For Eukaryotic LSU rRNA two sequences are provided: LSU-S (which refers to the 5.8S molecule) and LSU-L (which refers to the 25S or 28S molecule).

For tRNA and rRNA the numbering scheme above the alignment is based on the E.coli sequences. For all other RNA types it refers to the first sequence in the alignment. Helical regions are colored in red, loop and bulge regions in black. Sequence alignment and secondary structure for rRNA are presented according to CRW database. Modified bases are underlined and hyperlinked.The underscore sign (_) in tRNA alignment indicates an insertion.
Please note that the modifications are based on experimental data, which may not always cover the entire sequence. Thus, modifications existing in vivo may be missing.