Proteins involved in RNA modification

One-letter and colors for RNA types
tRNA t
mRNA m
SSU rRNA s
LSU rRNA l
snRNA n
other name of the type

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Traditional Name Full name Synonym GI Orf
COG UniProt Structures (PDB id) Position | Modification type Complex
Enzyme Type Organism
Displaying 20 proteins per page. To display all 340 proteins use:

Traditional Name Full name Synonym GI Orf COG UniProt Structures (PDB id)

Position

Modification
type

Complex Enzyme Type Organism
Dus3 tRNA-dihydrouridine synthase 3 547573 YLR401C Q06053
t:47 D
dihydrouridine synthase Saccharomyces cerevisiae
Dus4 tRNA-dihydrouridine synthase 4 2833204 YLR405W, L8084.2 COG0042 Q06063
t:20a D
t:20b D
dihydrouridine synthase Saccharomyces cerevisiae
DusA tRNA dihydrouridine synthase A YjbN 3183570 yjbN, b4049 COG0042 P32695
t:20 D
dihydrouridine synthase Escherichia coli
DusB tRNA dihydrouridine synthase B YhdG 78100051 yhdG,b3260 COG0042 P0ABT5
t:16 D
t:20 D
t:20a D
t:17 D
dihydrouridine synthase Escherichia coli
DusC tRNA dihydrouridine synthase C YohI 466094 yohI, b2140 COG0042 P33371 3w9z
t:20 D
t:20a D
t:16 D
t:17 D
dihydrouridine synthase Escherichia coli
EfmM rRNA cytydine C-5-methyltransferase kanamycin and tobramycin resistance 16S rRNA methyltransferase 383329552 efmM E9KIK3 3M4X
s:1404(1404) m5C
methyltransferase Enterococcus faecium
Elp1 Elongator complex protein 1 IKI3, TOT1 2498477 L3502.7 COG5290 Q06706
Elongator complex Saccharomyces cerevisiae
Elp2 Elongator complex protein 2 TOT2 1176045 G7725 COG2319 P42935
Elongator complex Saccharomyces cerevisiae
Elp3 Elongator complex protein 3 HPA1, TOT3 6325171 COG1243 Q02908
Elongator complex Saccharomyces cerevisiae
Elp4 Elongator complex protein 4 HAP1, TOT7 6325155 COG0467 Q02884
Elongator complex Saccharomyces cerevisiae
Elp5 Elongator complex protein 5 ELP5, HAP2, TOT5, IKI1 377656546 COG1074 P38874
Elongator complex Saccharomyces cerevisiae
Elp6 Elongator complex protein 6 HAP3, TOT6 6323972 YM9924.04 COG1021 Q04868
Elongator complex Saccharomyces cerevisiae
ErmAM rRNA adenine N-6-methyltransferase macrolide-lincosamide-streptogramin B resistance 23S rRNA methyltransferase 127202 ermAM COG0030 P21236 1YUB
l:2085(2085) m6A
methyltransferase Streptococcus pneumoniae
ErmBC rRNA adenine N-6-methyltransferase 127199 COG0030 P10738
l:2058(2058) m6A
methyltransferase Escherichia coli
ErmC' rRNA adenine N-6-methyltransferase macrolide-lincosamide-streptogramin B resistance 23S rRNA methyltransferase 127198 ermC' COG0030 P13956 1QAM, 1QAN, 1QAO, 1QAQ
l:2085(2058) m6A
methyltransferase Bacillus subtilis
FBL rRNA 2′-O-methyltransferase fibrillarin FIB1, FLRN, fibrillarin 12056465 COG1889 P22087 2IPX
l:many Xm
s:many Xm
C/D RNP methyltransferase Homo sapiens
FTO Alpha-ketoglutarate-dependent dioxygenase FTO KIAA1752 122937263 Q9C0B1 3LFM
m:many A
m:many f6A
m:many hm6A
demethylase Homo sapiens
FlpA Fibrillarin-like rRNA/tRNA 2′-O-methyltransferase aFib, Fibrillarin-like 15897821 C33_014 COG1889 P58032 3PLA, 3ID5, 3ID6
l:many Xm
s:many Xm
C/D RNP methyltransferase Sulfolobus solfataricus
FlpA Fibrillarin-like rRNA/tRNA 2′-O-methyltransferase aFib, MJ0697, Fibrillarin-like 15668878 COG1889 Q58108 1G8S, 1FBN
l:many Xm
s:many Xm
C/D RNP methyltransferase Methanocaldococcus jannaschii
FlpA Fibrillarin-like rRNA/tRNA 2′-O-methyltransferase aFib, PH0052, Fibrillarin-like 14590005 COG1889 O57811 1G8A
l:many Xm
s:many Xm
C/D RNP methyltransferase Pyrococcus horikoshii