Modification Summary

5-aminomethyl-2-selenouridine

[show modification pathway]
nm5se2U

Summary

Full name5-aminomethyl-2-selenouridine
Short namenm5se2U
New Nomenclature20510U
RNAMods abbreviationπ
HTML abbreviationπ
Enzymes MnmH (Escherichia coli)
MnmCD (Escherichia coli)
MnmE (Escherichia coli)
MnmE (Chlorobium tepidum)
MnmE (Nostoc sp.)
MnmE (Thermotoga maritima)
MnmG (Escherichia coli)
MnmG (Chlorobium tepidum)
MnmG (Aquifex aeolicus)
Found in phylogenyEubacteria
Found in RNA
SMILES codeNCC1=CN(C(=[Se])NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC10O5N3H15Se1
Monoisotopic mass335.0185
Average mass335.163597
HRMS mass335.966608
Normalized LC elution time
LC elution order/characteristics
LC literature references
MS Data File
MS/MS Data File
MS/MS/MS (base ion) Data File
MS literature references

Download [.mol file for nm5se2U]

Chemical groups contained

heavy atomselenium
methyl groupmethyl at aromatic C
otherprimary amine

Reactions producing 5-aminomethyl-2-selenouridine

Name
nm5s2U:nm5se2U
cmnm5se2U:nm5se2U
se2U:nm5se2U

Reactions starting from 5-aminomethyl-2-selenouridine

Name
nm5se2U:mnm5se2U

Last modification of this entry: 2014-07-11 15:59:16.678077
Edited by a user: magda
Edited content: Changed mass_monoiso and mass_avg.