Modification Summary

5-aminomethyluridine

[show modification pathway]
nm5U

Summary

Full name5-aminomethyluridine
Short namenm5U
New Nomenclature510U
RNAMods abbreviation
HTML abbreviation
Enzymes MnmCD (Escherichia coli)
MnmE (Escherichia coli)
MnmE (Chlorobium tepidum)
MnmE (Nostoc sp.)
MnmE (Thermotoga maritima)
MnmG (Escherichia coli)
MnmG (Chlorobium tepidum)
MnmG (Aquifex aeolicus)
Found in phylogenyEubacteria, Eukaryota
Found in RNA
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(CN)C(=O)NC1(=O)

LC-MS Information

Sum formulaC10O6N3H15
Monoisotopic mass273.096085
Average mass273.246005
HRMS mass273.095536
Normalized LC elution time * not available
LC elution order/characteristics not available
Mass transition not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for nm5U]

Chemical groups contained

methyl groupmethyl at aromatic C
otherprimary amine

Reactions producing 5-aminomethyluridine

Name
cmnm5U:nm5U
U:nm5U

Reactions starting from 5-aminomethyluridine

Name
nm5U:mnm5U
nm5U:nm5s2U
nm5U:inm5U

Last modification of this entry: 2013-05-10 16:36:56.387610
Edited by a user: magda
Edited content: Kingdom/s added to a modification