Modification Summary

5-methylaminomethyl-2-thiouridine

[show modification pathway]
mnm5s2U

Summary

Full name5-methylaminomethyl-2-thiouridine
Short namemnm5s2U
New Nomenclature2511U
RNAMods abbreviationS
HTML abbreviationS
Enzymes MnmCD (Escherichia coli)
MnmD (Aquifex aeolicus)
MnmA (Escherichia coli)
Mtu1 (Saccharomyces cerevisiae)
TrmU (Homo sapiens)
Found in phylogenyEubacteria, Eukaryota
Found in RNAtRNA
PubChem ID3036488
SMILES codeCNCC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Informations

Sum formulaC11O5N3H17S1
Monoisotopic mass303.088891
Average mass303.338077
HRMS mass303.088342
Normalized LC elution time * not available
LC elution order/characteristics not available
Mass transition not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for mnm5s2U]

Chemical groups contained

heavy atomsulfur
methyl groupmethyl at aromatic C
othersecondary amine

Reactions producing 5-methylaminomethyl-2-thiouridine

Name
nm5s2U:mnm5s2U
mnm5U:mnm5s2U

Reactions starting from 5-methylaminomethyl-2-thiouridine

Name
mnm5s2U:mnm5se2U
mnm5s2U:mnm5ges2U

Occurrence in PDB structures

PDB-ID chain residue
1fl8 A U8U /34

Last modification of this entry: 2013-05-10 16:36:59.476754
Edited by a user: magda
Edited content: Kingdom/s added to a modification