Modification Summary

5-methylaminomethyluridine

[show modification pathway]
mnm5U

Summary

Full name5-methylaminomethyluridine
Short namemnm5U
New Nomenclature511U
RNAMods abbreviation{
HTML abbreviation{
Enzymes MnmCD (Escherichia coli)
MnmD (Aquifex aeolicus)
Found in phylogenyEubacteria, Eukaryota
Found in RNAtRNA
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(CNC)C(=O)NC1(=O)

LC-MS Informations

Sum formulaC11O6N3H17
Monoisotopic mass287.111735
Average mass287.272994
HRMS mass287.111186
Normalized LC elution time * not available
LC elution order/characteristics not available
Mass transition not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for mnm5U]

Chemical groups contained

methyl groupmethyl at aromatic C
othersecondary amine

Reactions producing 5-methylaminomethyluridine

Name
nm5U:mnm5U

Reactions starting from 5-methylaminomethyluridine

Name
mnm5U:mnm5s2U

Occurrence in PDB structures

PDB-ID chain residue
1xmo X MNU /34

Last modification of this entry: 2013-05-10 16:36:59.641137
Edited by a user: magda
Edited content: Kingdom/s added to a modification