Modification Summary

5-methoxycarbonylmethyl-2-thiouridine

[show modification pathway]
mcm5s2U

Summary

Full name5-methoxycarbonylmethyl-2-thiouridine
Short namemcm5s2U
New Nomenclature2521U
RNAMods abbreviation3
HTML abbreviation3
Enzymes ALKBH8 (Homo sapiens)
Ncs6 (Saccharomyces cerevisiae)
Trm9 (Saccharomyces cerevisiae)
Ncs2 (Saccharomyces cerevisiae)
TrmU (Homo sapiens)
Found in phylogenyEukaryota
Found in RNAtRNA
SMILES codeO=C(OC)CC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC12O7N2H16S1
Monoisotopic mass332.067821
Average mass332.333024
HRMS mass332.067272
Normalized LC elution time
LC elution order/characteristics
LC literature references
MS Data File
MS/MS Data File
MS/MS/MS (base ion) Data File
MS literature references

Download [.mol file for mcm5s2U]

Chemical groups contained

heavy atomsulfur
othercarboxymethyl
othermethylester

Reactions producing 5-methoxycarbonylmethyl-2-thiouridine

Name
cm5s2U:mcm5s2U
mcm5U:mcm5s2U

Occurrence in PDB structures

PDB-ID chain residue
1fir A 70U /34

Last modification of this entry: 2013-05-10 16:36:58.696255
Edited by a user: magda
Edited content: Kingdom/s added to a modification