Modification Summary
5-methoxycarbonylmethyl-2′-O-methyluridine
[show modification pathway]
Summary
Full name | 5-methoxycarbonylmethyl-2′-O-methyluridine |
Short name | mcm5Um |
New Nomenclature | 0521U |
RNAMods abbreviation | ∩ |
HTML abbreviation | ∩ |
Enzymes |
|
Found in phylogeny | |
Found in RNA | tRNA |
SMILES code | C3(OC(CO)C(O)C(O(C))3)N1C=C(CC(=O)OC)C(=O)NC1(=O) |
LC-MS Information
Sum formula | C13O8N2H18 |
Monoisotopic mass | 330.1063 |
Average mass | 330.2949 |
[M+H]+ | 331.1141 |
Product ions | 185 |
Normalized LC elution time * | not available |
LC elution order/characteristics | not available |
* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.
LC-MS Publications
Title |
Authors |
Journal |
Details |
PubMed Id |
DOI |
Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry. |
Su D, Chan CT, Gu C, Lim KS, Chionh YH, McBee ME, Russell BS, Babu IR, Begley TJ, Dedon PC... |
Nat Protoc |
[details]
|
24625781
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Chemical groups contained
methyl group | methyl at O2 |
other | carboxymethyl |
other | methylester |
Reactions producing 5-methoxycarbonylmethyl-2′-O-methyluridine
Reactions starting from 5-methoxycarbonylmethyl-2′-O-methyluridine
Last modification of this entry: 2017-10-06 19:57:32.482256
Edited by a user: pboccaletto
Edited content: Changed mass_prot and product_ions.