Modification Summary

5-(carboxyhydroxymethyl)uridine methyl ester

[show modification pathway]
mchm5U

Summary

Full name5-(carboxyhydroxymethyl)uridine methyl ester
Short namemchm5U
New Nomenclature522U
RNAMods abbreviation,
HTML abbreviation,
Enzymes ALKBH8 (Homo sapiens)
Found in phylogenyEukaryota
Found in RNAtRNA
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(C(O)C(=O)OC)C(=O)NC1(=O)

LC-MS Information

Sum formulaC12O9N2H16
Monoisotopic mass332.0856
Average mass332.2672
[M+H]+333.0934
Product ions129/183/316/201/297
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for mchm5U]

Chemical groups contained

othercarboxymethyl
otherhydroxyl
othermethylester

Reactions producing 5-(carboxyhydroxymethyl)uridine methyl ester

Name
mcm5U:mchm5U
chm5U:mchm5U

Reactions starting from 5-(carboxyhydroxymethyl)uridine methyl ester

Name
mchm5U:mchm5Um

Last modification of this entry: 2013-05-10 16:36:55.415621
Edited by a user: magda
Edited content: Kingdom/s added to a modification