Modification Summary

5-methyl-2-thiouridine

[show modification pathway]
m5s2U

Summary

Full name5-methyl-2-thiouridine
Short namem5s2U
New Nomenclature25U
RNAMods abbreviationF
HTML abbreviationF
Enzymes TrmU (Homo sapiens)
Found in phylogenyEukaryota
Found in RNAtRNA
PubChem ID3035361
SMILES codeCC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC10O5N2H14S1
Monoisotopic mass274.062342
Average mass274.296389
HRMS mass274.061793
Normalized LC elution time
LC elution order/characteristics
LC literature references
MS Data File
MS/MS Data File
MS/MS/MS (base ion) Data File
MS literature references

Download [.mol file for m5s2U]

Chemical groups contained

heavy atomsulfur
methyl groupmethyl at aromatic C

Reactions producing 5-methyl-2-thiouridine

Name
m5U:m5s2U

Occurrence in PDB structures

PDB-ID chain residue
2axb A S2M /6
2axb B S2M /16

Last modification of this entry: 2013-05-10 16:36:59.086750
Edited by a user: magda
Edited content: Kingdom/s added to a modification