Modification Summary

5-methyluridine

[show modification pathway]
m5U

Summary

Full name5-methyluridine
Short namem5U
New Nomenclature5U
RNAMods abbreviationT
HTML abbreviationT
Enzymes RlmC (Escherichia coli)
RlmC (Pyrococcus abyssi)
RlmCD (Bacillus subtilis)
RlmD (Escherichia coli)
RlmFO (Mycoplasma capricolum)
Trm2 (Saccharomyces cerevisiae)
TrmA (Escherichia coli)
TrmFO (Bacillus subtilis)
TrmFO (Thermus thermophilus)
TrmU54 (Pyrococcus abyssi)
Found in phylogenyArchaea, Eubacteria, Eukaryota
Found in RNArRNA, tRNA
PubChem ID445408
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(C)C(=O)NC1(=O)

LC-MS Information

Sum formulaC10O6N2H14
Monoisotopic mass258.085186
Average mass258.231306
HRMS mass258.084637
Normalized LC elution time
LC elution order/characteristics
LC literature references
MS Data File
MS/MS Data File
MS/MS/MS (base ion) Data File
MS literature references

Download [.mol file for m5U]

Comments

Alternative name is ribosylthymidine.

Chemical groups contained

methyl groupmethyl at aromatic C

Reactions producing 5-methyluridine

Name
U:m5U

Reactions starting from 5-methyluridine

Name
m5U:m5Um
m5U:m5s2U

Occurrence in PDB structures

PDB-ID chain residue
1c0a B 5MU /654
1c2w B 5MU /747
1c2w B 5MU /1915
1c2w B 5MU /1939
1c2w B 5MU /2449
1efw C 5MU /54
1ehz A 5MU /54
1eqq M 5MU /801
1eqq M 5MU /802
1eqq M 5MU /803
1f7u B 5MU /954
1f7v B 5MU /954
1fcw A 5MU /54
1fcw B 5MU /54
1fcw C 5MU /54
1fcw D 5MU /54
1fcw E 5MU /54
1gix B 5MU /54
1gix C 5MU /54
1gix D 5MU /54
1h3e B RT /54
1h4q T 5MU /54
1i9v A 5MU /54
1il2 C 5MU /954
1il2 D 5MU /1954
1jgo B 5MU /54
1jgo C 5MU /54
1jgo D 5MU /54
1jgp B 5MU /54
1jgp C 5MU /54
1jgp D 5MU /54
1jgq B 5MU /54
1jgq C 5MU /54
1jgq D 5MU /54
1kos A 5MU /6
1mj1 D 5MU /54
1mj1 C 5MU /54
1ml5 B 5MU /54
1n1o A TFT /7
1n1o B TFT /119
1qf6 B 5MU /54
1sz1 E 5MU /54
1sz1 F 5MU /54
1tn2 5MU /54
1tra 5MU /54
1ttt E 5MU /54
1ttt F 5MU /54
1u6b D 5MU /1
1wv6 A 2BT /6
1wv6 B 2BT /16
1xv6 A U2L /7
1xv6 A U2L /8
1zzn D 5MU /1
2bh2 C FMU /1939
2bh2 D FMU /1939
2i1c z 5MU /54
2tra 5MU /54
3tra 5MU /54
486d A 5MU /54
486d C 5MU /54
486d E 5MU /54
4tna 5MU /54
4tra 5MU /54
6tna 5MU /54

Last modification of this entry: 2016-02-01 10:31:53.347329
Edited by a user: magda
Edited content: Changed pubchem_id.