Modification Summary

5,2′-O-dimethylcytidine

[show modification pathway]
m5Cm

Summary

Full name5,2′-O-dimethylcytidine
Short namem5Cm
New Nomenclature05C
RNAMods abbreviationτ
HTML abbreviationτ
Enzymes
Found in phylogeny
Found in RNA
SMILES codeC3(OC(CO)C(O)C(O(C))3)N1C=C(C)C(N)=NC1(=O)

LC-MS Information

Sum formulaC11O5N3H17
Monoisotopic mass271.1168
Average mass271.2737
[M+H]+272.1246
Product ions126
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for m5Cm]

Chemical groups contained

methyl groupmethyl at O2
methyl groupmethyl at aromatic C

Reactions producing 5,2′-O-dimethylcytidine

Name
Cm:m5Cm
m5C:m5Cm

Last modification of this entry: 2017-10-06 19:43:55.960932
Edited by a user: pboccaletto
Edited content: Changed mass_prot and product_ions.