Modification Summary

3-methylcytidine

[show modification pathway]
m3C

Summary

Full name3-methylcytidine
Short namem3C
New Nomenclature3C
RNAMods abbreviation'
HTML abbreviation'
Enzymes Trm140 (Saccharomyces cerevisiae)
Found in phylogenyEukaryota
Found in RNAtRNA
PubChem ID159649
SMILES codeC[N+]1=C(N)C=CN([C@@H]2O[C@H](CO)[C@H](O)C2O)C1=O

LC-MS Information

Sum formulaC10O5N3H15
Monoisotopic mass257.10117
Average mass257.2467
HRMS mass257.100621
Normalized LC elution time
LC elution order/characteristics
LC literature references
MS Data File
MS/MS Data File
MS/MS/MS (base ion) Data File
MS literature references

Download [.mol file for m3C]

Comments

m3C has a positive charge at neutral pH.

Chemical groups contained

methyl groupmethyl at aromatic N

Reactions producing 3-methylcytidine

Name
C:m3C

Occurrence in PDB structures

PDB-ID chain residue
1b5k A EDC /6
1b60 A EDC /6
1b6x A EDC /6
1b6y A EDC /6
1n5c A EDC /21

Last modification of this entry: 2017-03-22 13:58:56.559898
Edited by a user: pboccaletto
Edited content: No fields changed.