Modification Summary

5-hydroxycytidine

[show modification pathway]
ho5C

Summary

Full name5-hydroxycytidine
Short nameho5C
New Nomenclature50C
RNAMods abbreviationÇ
HTML abbreviationÇ
Enzymes
Found in phylogeny
Found in RNArRNA
SMILES codeNC1=NC(=O)N(C=C1O)C2OC(CO)C(O)C2O

LC-MS Information

Sum formulaC9H13N3O6
Monoisotopic mass259.0804
Average mass259.2188
[M+H]+260.0877
Product ions128
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for ho5C]

Chemical groups contained

otherhydroxyl

Reactions producing 5-hydroxycytidine

Name
C:ho5C

Publications

Title Authors Journal Details PubMed Id DOI
A novel minimum ribozyme with oxidoreduction activity. Yanagawa H, Ogawa Y, Ueno M, Sasaki K, Sato T... Biochemistry [details] 2271669 -
Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleotides in E. coli 23S rRNA. Havelund JF, Giessing AM, Hansen T, Rasmussen A, Scott LG, Kirpekar F J Mol Biol [details] 21723290 -

Last modification of this entry: 2013-05-10 16:36:58.416823
Edited by a user: magda
Edited content: Kingdom/s added to a modification