Modification Summary

2′‐O‐Methyl-5-hydroxymethylcytidine

[show modification pathway]
hm5Cm

Summary

Full name2′‐O‐Methyl-5-hydroxymethylcytidine
Short namehm5Cm
New Nomenclature
RNAMods abbreviation¡
HTML abbreviation¡
Enzymes
Found in phylogeny
Found in RNA
SMILES codeCOC1C(O)[C@@H](CO)O[C@H]1N1C=C(CO)C(N)=NC1=O

LC-MS Information

Sum formulaC11H17N3O6
Monoisotopic mass287.1117
Average mass287.272
[M+H]+ not available
Product ions not available
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for hm5Cm]

Publications

Title Authors Journal Details PubMed Id DOI
2'-O-Methyl-5-hydroxymethylcytidine: A Second Oxidative Derivative of 5-Methylcytidine in RNA. Huber SM, van Delft P, Tanpure A, Miska EA, Balasubramanian S... J Am Chem Soc [details] 28107630 -

Entry added on: 2019-04-01 19:07:58.956086, by a user: boccaletto