Modification Summary

5-hydroxymethylcytidine

[show modification pathway]
hm5C

Summary

Full name5-hydroxymethylcytidine
Short namehm5C
New Nomenclature51C
RNAMods abbreviation
HTML abbreviation
Enzymes
Found in phylogeny
Found in RNA
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(CO)C(N)=NC1(=O)

LC-MS Information

Sum formulaC10O6N3H15
Monoisotopic mass273.096085
Average mass273.246005
HRMS mass273.095536
Normalized LC elution time
LC elution order/characteristics
LC literature references
MS Data File
MS/MS Data File
MS/MS/MS (base ion) Data File
MS literature references

Download [.mol file for hm5C]

Chemical groups contained

otherhydroxymethyl

Reactions producing 5-hydroxymethylcytidine

Name
C:hm5C

Occurrence in PDB structures

PDB-ID chain residue
1ve8 A 5FC /9
1ve8 B 5FC /9

Last modification of this entry: 2013-05-10 16:36:58.468234
Edited by a user: magda
Edited content: Kingdom/s added to a modification