Modification Summary

5-carboxymethylaminomethyl-2-thiouridine

[show modification pathway]
cmnm5s2U

Summary

Full name5-carboxymethylaminomethyl-2-thiouridine
Short namecmnm5s2U
New Nomenclature251U
RNAMods abbreviation$
HTML abbreviation$
Enzymes MnmA (Escherichia coli)
Mtu1 (Saccharomyces cerevisiae)
TrmU (Homo sapiens)
MnmE (Escherichia coli)
MnmE (Chlorobium tepidum)
MnmE (Nostoc sp.)
MnmE (Thermotoga maritima)
MnmG (Escherichia coli)
MnmG (Chlorobium tepidum)
MnmG (Aquifex aeolicus)
Mss1 (Saccharomyces cerevisiae)
Mto1 (Saccharomyces cerevisiae)
Found in phylogenyEubacteria, Eukaryota
Found in RNAtRNA
PubChem ID3037867
SMILES codeO=C(O)CNCC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC12O7N3H17S1
Monoisotopic mass347.07872
Average mass347.347723
HRMS mass347.078171
Normalized LC elution time * not available
LC elution order/characteristics not available
Mass transition not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for cmnm5s2U]

Chemical groups contained

aminoacyl groupglycyl
heavy atomsulfur
methyl groupmethyl at aromatic C
othersecondary amine

Reactions producing 5-carboxymethylaminomethyl-2-thiouridine

Name
cmnm5U:cmnm5s2U
s2U:cmnm5s2U

Reactions starting from 5-carboxymethylaminomethyl-2-thiouridine

Name
cmnm5s2U:nm5s2U
cmnm5s2U:cmnm5se2U
cmnm5s2U:cmnm5ges2U

Last modification of this entry: 2013-05-10 16:36:57.508071
Edited by a user: magda
Edited content: Kingdom/s added to a modification