Modification Summary

5-carboxymethylaminomethyl-2′-O-methyluridine

[show modification pathway]
cmnm5Um

Summary

Full name5-carboxymethylaminomethyl-2′-O-methyluridine
Short namecmnm5Um
New Nomenclature051U
RNAMods abbreviation)
HTML abbreviation)
Enzymes TrmL (Escherichia coli)
MnmE (Escherichia coli)
MnmE (Chlorobium tepidum)
MnmE (Nostoc sp.)
MnmE (Thermotoga maritima)
MnmG (Escherichia coli)
MnmG (Chlorobium tepidum)
MnmG (Aquifex aeolicus)
Found in phylogenyEubacteria
Found in RNAtRNA
SMILES codeC3(OC(CO)C(O)C(O(C))3)N1C=C(CNCC(=O)O)C(=O)NC1(=O)

LC-MS Information

Sum formulaC13O8N3H19
Monoisotopic mass345.1172
Average mass345.3096
[M+H]+346.125
Product ions271/221/111/129/253/200
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for cmnm5Um]

Chemical groups contained

aminoacyl groupglycyl
methyl groupmethyl at O2
othersecondary amine

Reactions producing 5-carboxymethylaminomethyl-2′-O-methyluridine

Name
cmnm5U:cmnm5Um
Um:cmnm5Um

Last modification of this entry: 2017-10-06 19:58:16.915404
Edited by a user: pboccaletto
Edited content: Changed mass_prot and product_ions.