Modification Summary

5-carboxymethyluridine

[show modification pathway]
cm5U

Summary

Full name5-carboxymethyluridine
Short namecm5U
New Nomenclature52U
RNAMods abbreviation
HTML abbreviation
Enzymes
Found in phylogenyEukaryota
Found in RNA
PubChem ID3080720
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(CC(=O)O)C(=O)NC1(=O)

LC-MS Information

Sum formulaC11O8N2H14
Monoisotopic mass302.075015
Average mass302.240952
HRMS mass302.074466
Normalized LC elution time * not available
LC elution order/characteristics not available
Mass transition132 (Su 2014); 150 (Su 2014)

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

LC-MS Publications

Title Authors Journal Details PubMed Id DOI
Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry. Su D, Chan CT, Gu C, Lim KS, Chionh YH, McBee ME, Russell BS, Babu IR, Begley TJ, Dedon PC... Nat Protoc [details] 24625781 -

Download [.mol file for cm5U]

Chemical groups contained

othercarboxymethyl

Reactions producing 5-carboxymethyluridine

Name
U:cm5U

Reactions starting from 5-carboxymethyluridine

Name
cm5U:mcm5U
cm5U:chm5U

Last modification of this entry: 2017-07-05 17:10:51.229819
Edited by a user: pboccaletto
Edited content: No fields changed.