Modification Summary

5-carboxyhydroxymethyluridine

[show modification pathway]
chm5U

Summary

Full name5-carboxyhydroxymethyluridine
Short namechm5U
New Nomenclature520U
RNAMods abbreviation
HTML abbreviation
Enzymes
Found in phylogeny
Found in RNA
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=C(C(O)C(=O)O)C(=O)NC1(=O)

LC-MS Information

Sum formulaC11O9N2H14
Monoisotopic mass318.0699
Average mass318.2403
[M+H]+319.0777
Product ions187/169/141
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for chm5U]

Chemical groups contained

othercarboxymethyl
otherhydroxyl

Reactions producing 5-carboxyhydroxymethyluridine

Name
cm5U:chm5U

Reactions starting from 5-carboxyhydroxymethyluridine

Name
chm5U:mchm5U

Last modification of this entry: 2013-05-10 16:36:56.849813
Edited by a user: magda
Edited content: Kingdom/s added to a modification