Modification Summary

3-(3-amino-3-carboxypropyl)uridine

[show modification pathway]
acp3U

Summary

Full name3-(3-amino-3-carboxypropyl)uridine
Short nameacp3U
New Nomenclature30U
RNAMods abbreviationX
HTML abbreviationX
Enzymes
Found in phylogeny
Found in RNArRNA, tRNA
SMILES codeC3(OC(CO)C(O)C(O)3)N1C=CC(=O)N(CCC(N)C(=O)O)C1(=O)

LC-MS Information

Sum formulaC13O8N3H19
Monoisotopic mass345.1172
Average mass345.3096
[M+H]+346.125
Product ions214/197/168
Normalized LC elution time *0,46 (Kellner 2014)
LC elution order/characteristicsbetween C and U (Kellner 2014)

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

LC-MS Publications

Title Authors Journal Details PubMed Id DOI
Profiling of RNA modifications by multiplexed stable isotope labelling. Kellner S, Neumann J, Rosenkranz D, Lebedeva S, Ketting RF, Zischler H, Schneider D, Helm M. Chem Commun (Camb). [details] 24567952 -

Download [.mol file for acp3U]

Chemical groups contained

aminoacyl groupaspartyl

Reactions producing 3-(3-amino-3-carboxypropyl)uridine

Name
U:acp3U

Reactions starting from 3-(3-amino-3-carboxypropyl)uridine

Name
acp3U:acp3Um
acp3U:acp3Y

Last modification of this entry: 2017-10-06 16:23:35.730066
Edited by a user: pboccaletto
Edited content: Changed mass_prot.