Modification Summary

agmatidine

[show modification pathway]
C+

Summary

Full nameagmatidine
Short nameC+
New Nomenclature20C
RNAMods abbreviation¿
HTML abbreviation¿
Enzymes TiaS (Archaeoglobus fulgidus)
Found in phylogenyArchaea
Found in RNAtRNA
SMILES codeNC(=N)NCCCCNC1=NC(=N)C=CN1C2OC(CO)C(O)C2O

LC-MS Information

Sum formulaC14H25N7O4
Monoisotopic mass355.1968
Average mass355.3973
[M+H]+356.2046
Product ions224
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Download [.mol file for C+]

Comments

alternative name: 2-agmatinylcytidine, alternative abbreviation: agmt

Reactions producing agmatidine

Name
C:C+

Publications

Title Authors Journal Details PubMed Id DOI
Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. Mandal D, Kohrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Soll D, RajBhandary UL Proc Natl Acad Sci U S A [details] 20133752 -
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T, Suzuki T Nat Chem Biol [details] 20139989 -
The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome. Voorhees RM, Mandal D, Neubauer C, Kohrer C, Rajbhandary UL, Ramakrishnan V... Nat Struct Mol Biol [details] 23542153 -

Last modification of this entry: 2014-07-11 16:12:55.778827
Edited by a user: magda
Edited content: Changed formula, formula_html, mass_monoiso, mass_avg, mass_hrms and papers.